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Journal of Bacteriology, September 2002, p. 4943-4951, Vol. 184, No. 18
0021-9193/02/$04.00+0 DOI: 10.1128/JB.184.18.4943-4951.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
A Genetically Economical Family of Plasmid-Encoded Transcriptional Repressors Involved in Control of Plasmid Copy Number
Gloria del Solar,1* Ana M. Hernández-Arriaga,1 F. Xavier Gomis-Rüth,2 Miquel Coll,2 and Manuel Espinosa1
Centro de Investigaciones Biológicas, Madrid,1
Institut de Biologia Molecular de Barcelona, Consejo Superior de Investigaciones Científicas, Barcelona, Spain2

INTRODUCTION
During the last decade, the number of plasmids found to replicate
by a rolling-circle mechanism has experienced an enormous increase.
This group of plasmids now includes more than 200 replicons
isolated from a variety of gram-positive and gram-negative bacteria
as well as from archaea. All rolling circle-replicating plasmids
isolated so far are small (less than 12 kb), indicating that
economy of genetic information could be an important aspect
of these replicons. Among these plasmids a family has been defined,
with pMV158 as a prototype, in which control of replication
involves two plasmid-encoded elements: an antisense RNA and
a small transcriptional repressor Cop protein (
6,
7). The pMV158-encoded
CopG protein has been analyzed in some detail. The hydrodynamic
behavior of the native homodimeric protein was studied, and
the three-dimensional structures of CopG that are free and bound
to the central part of its target DNA have been determined (
1,
10). In spite of the smallness of CopG (45 residues for each
subunit), there is a relatively large extension of DNA (about
50 bp) contacted by the bound protein, which results from cooperative
binding of several CopG dimers to this 50-bp operator. Generation
of this nucleoprotein complex does not only rely on the cooperative
CopG dimer-dimer interactions but also on the specific recognition
of the sequence and/or the structure of the entire operator.
In that way, a small protein, representing minimal genetic information,
could exhibit a high specificity of binding to its target DNA.
The aim of this review is to present a summary of the most relevant molecular aspects of CopG, which is the prototype of the Cop proteins encoded by plasmids of the pMV158 family. As shown for CopG, all these small Cop proteins could exhibit a ribbon-helix-helix (RHH) arrangement, with the two antiparallel ß-strands of the ribbon, each coming from one of the protein monomers, involved both in dimer formation and in specific interactions with DNA bases in the operator. Modeling of these Cop proteins on the determined structure of CopG shows that dimer-dimer interfaces similar to that of CopG could arise from specific oligomerization upon binding of the Cop dimers to their target DNAs. Thus, these Cop proteins would represent the minimal functional plasmid-encoded element able to inhibit RNA polymerase activity by binding to the operator DNA in a specific and highly cooperative way.

FEATURES OF CopG AND COMPARISON WITH OTHER RHH TRANSCRIPTIONAL REPRESSORS
The
copG gene of plasmid pMV158 encodes the transcriptional
repressor CopG, a homodimeric 45-residue protein that constitutes
the smallest natural transcriptional repressor characterized
so far. The existence of such a small gene was proposed early
(
13), even though, in general,
orfs that encode polypeptides
smaller than 50 residues were not taken into account when researchers
were looking for genes involved in replication and its control.
CopG is the prototype of a series of repressor proteins encoded
by plasmids that exhibit a similar genetic structure at their
leading strand initiation and control regions (
8). Protein CopG
binds to and represses the single
Pcr promoter that directs
the synthesis of a bicistronic mRNA for CopG and the RepB initiator
of replication (Fig.
1A). Thus, by binding to the
copG-repB promoter region, CopG regulates its own synthesis and that of
RepB (
9). The specific target of CopG spans about 50 bp and
includes a central 13-bp pseudosymmetric element (inverted repeat)
that encompasses most of the -35 box of the promoter (Fig.
1A).
Each half-site of the symmetric element contains the palindromic
sequence 5'-TGCA-3' (Fig.
1B), so that two self-symmetrical
subsites are present within the element (
9,
10). The hydrodynamic
behavior of the native CopG shows that the protein is a dimer
in solution at concentrations ranging from 10 to 800 µM,
with no detectable monomers or association states with a higher
number of molecules than dimers. CopG dimers are nearly spherical,
with a deduced Stokes radius of around 16 Å (
1). With
these features, a CopG dimer bound to its target DNA occupies
approximately one helical turn (Fig.
1C). The three-dimensional
structures of CopG free and bound to either a 19-bp (
10) or
a 22-bp (
5) double-stranded DNA containing the pseudosymmetric
element have been determined. These constituted the first examples
of a solved plasmid-encoded transcriptional repressor crystal
structure. In the cocrystals, one CopG dimer is bound to each
half-site of the pseudosymmetric element. Although the protein
dimer and the two half-sites have twofold symmetry, the contacts
made by each CopG dimer on the DNA are essentially asymmetric,
both in the sequence of the contacted bases (Fig.
1B) and in
the amino acids involved in these interactions (
5,
10).
CopG dimers show an RHH arrangement (Fig.
2A) similar to those
previously determined for the transcriptional repressors Arc
(53 residues) and Mnt (82 residues) of
Salmonella enterica serovar
Typhimurium bacteriophage P22 and 104-residue MetJ of
Escherichia coli (
3,
4,
20). All these proteins share a dimerizing 40- to
45-residue RHH motif (Fig.
2B) in which the two-stranded antiparallel
ß-sheet fits snugly into the major groove of the target
DNA to establish specific interactions (Fig.
3). Within the
RHH motif, the peptide backbone of the CopG dimer fits almost
exactly that of Arc (Fig.
2B), while fewer similarities are
found between the topologically equivalent C

atoms of CopG and
Mnt dimers. Although MetJ lacks a glycine-mediated turn (which
in Arc, Mnt, and CopG connects the two

-helices included in
the RHH signature) and has a longer loop instead, there is a
good match between the C

atoms of CopG and those equivalent
in MetJ (Fig.
2B), once the insertion in this latter protein
is considered (
10). In spite of CopG exhibiting a high structural
similarity with the RHH motif of Arc, Mnt, and MetJ, the plasmid-encoded
protein shows major differences with the three other repressors
in fundamental aspects, such as the regions involved in contacts
to the operator DNA or in cooperative dimer-dimer interactions.
Direct contacts of CopG to the target DNA are necessarily restricted
to the RHH motif, because it comprises the entire protein (Fig.
3A). Essential interactions with their operators, including
direct contacts with the bases, originate mainly from the RHH
motifs of Arc, Mnt, and MetJ. However, unlike CopG, these three
proteins contain additional regions also involved in contacts
with their target DNAs. In Arc (Fig.
3B), the six N-terminal
residues, which are disordered in the unbound dimer, form tandem
reverse turns (a 3
10 helix) that interact with the DNA in the
Arc-operator complex (
21). A flexible loop immediately preceding
each ß-strand of the MetJ dimeric holorepressor changes
its conformation upon binding to the target DNA (Fig.
3C) and
wraps around and contacts the phosphate backbone (
23). Although
the structure of Mnt bound to its target DNA has not been determined,
biochemical experiments also show that Mnt uses an N-terminal
arm to wrap around and to contact the center of its operator
(
11,
19). Thus, CopG, containing exclusively the RHH motif,
represents the minimal DNA-binding structure within this superfamily
of repressor proteins. While this review was being written,
the structures of two plasmid-encoded repressor proteins, both
of them included in modules for better-than-random segregation
of the plasmid copies, were determined (
18). Protein

(71 residues),
from the streptococcal plasmid pSM19035, has been crystallized
alone, whereas ParD (82 amino acids), from plasmid RK2, has
been determined by nuclear magnetic resonance. Both proteins
have the RHH motif that would be involved in binding to DNA
(
17,
18). Protein

has a 27-residue-long, flexible, N-terminal
region before the RHH that could interact with DNA, although
most of this part is not seen in the crystal structure (
17).
In the case of ParD, the dimeric protein exhibited a well-structured
N-terminal domain and its first residues could be aligned with
the entire length of CopG; the C-terminal moiety of ParD turned
out to be relatively unstructured.
Although association states with a higher number of molecules
than dimers are only found in solutions of free Mnt (which is
a tetramer), some oligomerization occurs upon cooperative binding
of dimeric Arc, MetJ, and CopG to their cognate target DNAs.
Arc and Mnt are tetramers when bound to the operator DNA, whereas,
in MetJ-operator complexes, each repressor dimer binds to one
of the two to five tandem 8-bp Met boxes that constitute the
operator (
23). Comparative analysis of different natural MetJ
operators indicates that the number of Met boxes tends to increase
as their similarity to the consensus Met box decreases (
20).
Dimer-dimer contacts that account for the observed cooperative
DNA binding involve protein regions that are different in the
repressor/operator complexes of Arc and MetJ (Fig.
3B and C):
Arc dimers make contacts through the loop between helices A
and B of the RHH motif, whereas MetJ dimers interact along the
entire length of helix A (
21,
23). These differences would accommodate
the distinct spacing between consecutive binding sites of Arc
or MetJ dimers, which, in turn, results in an Arc tetramer bound
to one face of the DNA, while arrays of MetJ dimers wrap around
the DNA helix (Fig.
3B and C). As in Arc and MetJ, CopG oligomerization
states higher than dimers seem to depend on the presence of
the target DNA in the solution. In spite of this, two similar
(although not identical) kinds of dimer-dimer interfaces (related
either by a crystallographic or a local dyad) are observed in
the crystal structure of the unbound CopG (Fig.
4), resulting
in the generation of a right-handed helical superstructure that
encompasses six CopG dimers per turn (
10). In contrast, the
unliganded crystal structures of Arc and MetJ do not show these
protein superstructures, indicating looser interdimer contacts
in these repressors. Cocrystals of CopG bound to the operator
central region, which encompasses the 13-bp pseudosymmetric
inverted repeat (Fig.
3A), show a protein tetramer interacting
through the ß-ribbons with the major groove at two
consecutive DNA helix turns on the same face of the DNA (
5,
10). Dimers in this bound tetramer interact in the same way
as the dimers related by a crystallographic dyad in the unbound
crystal structure of CopG (Fig.
4). Despite the general resemblance
between the crystal structures of CopG bound to DNA and those
of Arc-operator complexes, CopG regions involved in dimer-dimer
interactions span farther than those in Arc (compare Fig.
3A and B)
and include residues located in the loops between the
three regular secondary structure elements, in helix A, and
in almost the entire length of helix B (
10). This results in
a dimer-dimer interaction surface that is almost twice as much
as that observed in the Arc-operator complex. As a consequence
of the strong dimer interpenetration, a 50 to 60° DNA bending
is induced upon binding of the CopG tetramer, involving compression
not only of the DNA minor groove in the center of the target
(which is the case in the Arc-operator complex) but also of
the major groove at two successive helical turns interacting
with the protein (Fig.
3A). In the Arc-bound DNA, compression
of the major groove facing the protein is prevented by interaction
of the N-terminal 3
10 helix of Arc, so that the major grooves
are even widened with respect to the idealized B-DNA (Fig.
3B).
This different architecture of the Arc-operator complex with
the looser dimer-dimer interaction results in an induced DNA
bend of only 22°.
The solved crystal structure of the CopG-DNA complex reveals
only, unfortunately, the central region of the entire operator
bound by CopG, and attempts at obtaining cocrystals of CopG
complexed to a 55-bp oligonucleotide comprising the whole operator
remain unsuccessful. Information on the interactions of CopG
with the DNA regions adjacent to the inverted repeat arises
from footprinting and preliminary stoichiometry analyses. The
present model implies cooperative binding of four CopG dimers
on the same face of the operator double helix, inducing a 120°
global DNA bend towards the protein (Fig.
1C). The two central
dimers correspond to the tetramer bound to the inverted repeat
of the operator (as seen in the solved cocrystals), while one
more dimer is bound at each side of this central tetramer interacting,
by the same face of the DNA, with the major groove adjacent
to the inverted repeat (
10). Binding of the two outer CopG dimers
seems to depend, directly or indirectly, on the nucleotide sequence,
as it could be prevented by changing the DNA adjacent to the
inverted repeat. Recombinant DNAs containing only the central
region of the wild-type CopG operator are bound very inefficiently
by the protein, suggesting that binding of the outer CopG dimers
might stabilize the nucleoprotein complex by dimer-dimer cooperative
interactions (G. del Solar, unpublished results). In this sense,
cooperative interactions seem to have an even greater influence
on the affinity of CopG binding than the strict conservation
of the inverted repeat DNA sequence, as deduced from the rather
slight effect arising from point mutations in this element (including
some changes that affect CopG-contacted bases). In contrast,
systematic mutation of each base in a double
met box operator
showed that the largest reduction in MetJ binding affinity results
from mutations at bases that make direct contacts to the protein
(
23). Also, mutations in the TAGA boxes located at the Arc operator
half-sites and involved in contacts with Arc have been found
to be extremely deleterious to binding of this repressor (
21).

Cop PROTEINS ENCODED BY PLASMIDS OF THE pMV158 FAMILY
A sequence alignment of CopG with the other Cop proteins of
the pMV158 family of plasmids (Fig.
5) shows that they all display
features that are compatible with a dimeric RHH structure. Up
to 22 Cop proteins (out of the 24 members of the family) were
found, although some of them were identical: those of pFX2,
pWV01, and pSH71 (once a single mistake in the nucleotide sequence
of the latter is assumed) and also those of pLF1311 and pLF14.
A putative Cop protein can be proposed to be encoded by pLH2,
assuming that a single mistake in the nucleotide sequence would
result in an initiation codon for a
cop gene. Only plasmids
pHPK255 and pHP489 (both from
Helicobacter pylori) seem to lack
a
cop gene, while the other plasmids of the pMV158 family would
encode Cop proteins ranging in size between 44 and 56 residues.
CopG from pMV158 and its closely related pSSU1-Cop, pLH2-Cop,
and pSMQ172-Cop are the shortest proteins, perhaps constituting
the minimal structure unit for these repressors. In the other
Cop proteins, extensions at their N and/or C termini are observed
(Fig.
5), so that involvement of these regions in additional
contacts with the DNA (as is the case with N-terminal segments
of Arc, MetJ, and Mnt) or in oligomerization cannot be discarded.
All of these Cop sequences (with the exception of CopE of pE194)
have the glycine-mediated turn connecting the two

-helices,
and residues of similar nature are located at those positions
involved in the maintenance of the hydrophobic core structure
of the dimer (Fig.
5).
An interesting and still unanswered question arises on whether
the dimer-dimer interface of these proteins is similar to that
observed in the CopG cocrystals. If so, either conservation
of residues at the relative positions constituting the dimer-dimer
interaction surface or compensatory changes affecting both sides
of this interface should be expected. The residues involved
in interdimer interactions to render a functional tetramer mainly
comprise positions 23 to 37 (molecule A) and 9 to 13 (molecule
B) of one CopG dimer. They constitute, together with the same
segments of molecules C and D, respectively, the contact surface
(Fig.
6A). On inspecting these positions in the sequences of
the Cop family members (Fig.
5), it can be seen that all cases
are compatible with our experimental pMV158 CopG/cognate double-stranded
DNA structure, so that they should be capable of building up
structurally similar tetramers (Fig.
3A). Wherever nonconservative
substitutions occur, these changes are compensated for by appropriate
substitutions at other positions among those that make up the
dimer-dimer interface. To address this issue in more detail,
we have made a model of the most divergent Cop family member,
CopE from pE194 (
12). Among the residues engaged in interface
shaping, only four residues are conserved relative to CopG,
five are replaced by similar amino acids, and 11 substitutions
are nonconservative (Fig.
5 and
6B and C). CopE is the only
member of the family not displaying the characteristic Gly at
the relative position 25 in the turn connecting the two helices
of the RHH motif. If one looks at the modeled interface (Fig.
6), only one position appears that could produce a slight sterical
hindrance, precisely around relative position 25, which is an
Asn residue in CopE. All other amino acid substitutions are
compatible with our structure. This substitution is, in principle,
possible, as the main chain angles flanking this residue in
the experimental structure (

and

= 54 and 40°) lie within
a most-favored region of a Ramachandran plot, corresponding
to a left-handed

-helix. In the model, the C
ß atoms
of positions 10 and 25 would be just 2.5 Å from each other.
But a minimum rearrangement of the main chain at either position
could easily compensate for this. According to our model, the
side chain of Asn in position 25 (in CopE) would be perfectly
accommodated by the main chain of segment between relative positions
9 and 12 (Leu-Glu), with its O

1 hydrogen atom bonded by the
main chain amide nitrogen atoms and with its N

2 atom interacting
with Glu12 O

1, also different from the experimental CopG structure
(Ser12). A further noteworthy change, Ala (CopG) to Asp (CopE),
occurs at position 30, and the locations of these positions
in both chains A and C are rather close to each other (the C
ß-to-C
ß distance is 4.5 Å). To minimize electrostatic repulsion
of the side chains, a rotamer could be thought of where both
carboxylate groups lie in parallel planes. These positions would
be further stabilized by an interaction of O

1 of Asp in position
30 with O

of Ser in position 27, practically in the same rotamer
position as that of CopG.
With regard to the interactions of Cop proteins with their cognate
DNA targets, a subgroup of Cop proteins consisting of those
from pMV158, pSSU1, pLH2, pSMQ172, and pLA106 can be clearly
distinguished, based on the conservation of residues at relative
positions that, in CopG, make contacts with the target DNA (Fig.
5). These residues are identical in the Cop proteins encoded
by pMV158, pSSU1, pLH2, and pSMQ172, while a Ser is found instead
of the equivalent conserved Thr at the relative position 8 in
pLA106-Cop (Fig.
5). Conservation of amino acids involved in
contacts with the target DNA should correlate with conservation
of the Cop operator sequences in these five plasmids. This prompted
us to try to locate these operators under the following constraints:
(i) they must be placed in a region overlapping the corresponding
putative
cop-rep promoters, and (ii) they should have the 5'-TGCA-3'
half-sites within a pseudosymmetric 13-bp element. Boxes -35
and -10 of putative
cop-rep promoters had been proposed for
plasmids pSSU1, pSMQ172, and pLA106 (GenBank accession numbers
AB019522,
AF295100, and
D88438, respectively). However, and
with the above criteria, we could locate a promoter different
from that proposed for pSMQ172 and could find the putative -10
and -35 boxes of the pLH2
cop-rep promoter (see below). All
these promoters would contain an extended -10 box, as is the
case with the pMV158
Pcr promoter (
22). As expected, each of
these plasmids was found to possess a 12- or 13-bp pseudosymmetric
element that overlaps the proposed -35 box with the same relative
location as that of the inverted repeat of pMV158 (Fig.
7).
These elements also contain, at either one or both half-sites,
the 5'-TGCA-3' sequence, which, in pMV158, is involved in specific
interactions with CopG. The dissimilarities of the Cop operators
of pSSU1, pLH2, pSMQ172, and pLA106 with respect to the pMV158-CopG
operator are not so unexpected if we take into account that
some of these changes (even those affecting bases contacted
by the protein) have been found not to impair significantly
the binding of CopG to its target DNA (del Solar, unpublished).
A search for
copG-like genes in the sequenced bacterial genomes
did not show any significant homology. In addition, we did not
find any sequence similar to the 13-bp pseudosymmetric element,
the primary target of CopG.

OTHER PLASMID-ENCODED CopG-LIKE PROTEINS
Although CopG is the best known plasmid-encoded RHH protein,
the structures of the plasmid-encoded repressor proteins

and
ParD have recently been determined and shown to belong to the
same RHH superfamily (
17,
18). A search for proteins with structure
and function similar to that of CopG in plasmids unrelated to
pMV158 revealed the existence of four more proteins encoded
by the rolling circle-replicating plasmids pHD2, pRN1, pRN2,
and pDL10, the last three of which have been isolated from archaeal
hosts (references
14 and
15 and references therein). Sequence
similarities between CopG and these proteins are much lower
than those observed among the Cop proteins of the pMV158 plasmid
family, and the involvement of these proteins in the control
of plasmid replication remains to be proved. However, the Cop
protein of plasmid pRN1 binds to a DNA region containing the
putative
cop-rep promoter (
14). Based on sequence homology,
the TraY and TrwA proteins of conjugative plasmids have been
proposed to contain the RHH motif (
3,
16), thus increasing the
number of plasmid-encoded proteins belonging to the Arc/MetJ
superfamily from the small number reported earlier (
19) to the
30 proteins reported here (Fig.
5). We conclude that this class
of proteins is likely to be far more widespread. Because they
are encoded by very small replicons, like the 1,717-bp mycoplasma
plasmid pADB201 (
2), these proteins may represent an efficient
solution found to problems of gene regulation, such as the delicate
function of controlling the synthesis of an essential initiator.

ACKNOWLEDGMENTS
Thanks are due to Jose A. Ruiz-Masó for his help and
to members of our labs for discussions.
Research was funded by European Union-Ministerio de Ciencia y Tecnología (MCyt) grant 2FD97-0518 (to M.C. and M.E.) and by grants from MCyT (BMC2000-0550 to M.E., PB98-1631 to M.C., and BIO2000-1659 to F.X.G.-R.), the Generalitat de Catalunya (SGR188 to M.C.), and the Comunidad de Madrid (CAM 07/B/49/99 to G.D.S.).

FOOTNOTES
* Corresponding author. Mailing address: Centro de Investigaciones Biologicas, Velázquez, 144, 28006-Madrid, Spain. Phone: (34) 915611800. Fax: (34) 915627518. E-mail:
gdelsolar{at}cib.csic.es.


REFERENCES
1 - Acebo, P., M. Garcia de Lacoba, G. Rivas, J. M. Andreu, M. Espinosa, and G. del Solar. 1998. Structural features of the plasmid pMV158-encoded transcriptional repressor CopG, a protein sharing similarities with both helix-turn-helix and ß-sheet DNA binding proteins. Proteins Struct. Funct. Genet. 32:248-261.[CrossRef][Medline]
2 - Bergemann, A. D., J. C. Whitley, and L. R. Finch. 1989. Homology of mycoplasma plasmid pADB201 and staphylococcal plasmid pE194. J. Bacteriol. 171:593-595.[Abstract/Free Full Text]
3 - Breg, J. N., J. H. J. van Ophesden, M. J. Burgering, R. Boelens, and R. Kaptein. 1990. Structure of Arc repressor in solution: evidence for a family of ß-sheet DNA-binding proteins. Nature 346:586-589.[CrossRef][Medline]
4 - Burgering, M. J. M., R. Boelens, D. E. Gilbert, J. N. Breg, K. L. Knight, R. T. Sauer, and R. Kaptein. 1994. Solution structure of dimeric Mnt repressor (1-76). Biochemistry 33:15036-15045.[CrossRef][Medline]
5 - Costa, M., M. Solá, G. del Solar, R. Eritja, A. M. Hernández-Arriaga, M. Espinosa, F. X. Gomis-Rüth, and M. Coll. 2001. Plasmid transcriptional repressor CopG oligomerises to render helical superstructures unbound and in complexes with oligonucleotides. J. Mol. Biol. 310:403-417.[CrossRef][Medline]
6 - del Solar, G., P. Acebo, and M. Espinosa. 1995. Replication control of plasmid pLS1: efficient regulation of plasmid copy number is exerted by the combined action of two plasmid components, CopG and RNA II. Mol. Microbiol. 18:913-924.[CrossRef][Medline]
7 - del Solar, G., and M. Espinosa. 1992. The copy number of plasmid pLS1 is regulated by two trans-acting plasmid products: the antisense RNA II and the repressor protein, RepA. Mol. Microbiol. 6:83-94.[CrossRef][Medline]
8 - del Solar, G., R. Giraldo, M. J. Ruiz-Echevarría, M. Espinosa, and R. Díaz-Orejas. 1998. Replication and control of circular bacterial plasmids. Microbiol. Mol. Biol. Rev. 62:434-464.[Abstract/Free Full Text]
9 - del Solar, G., J. Pérez-Martín, and M. Espinosa. 1990. Plasmid pLS1-encoded RepA protein regulates transcription from repAB promoter by binding to a DNA sequence containing a 13-base pair symmetric element. J. Biol. Chem. 265:12569-12575.[Abstract/Free Full Text]
10 - Gomis-Rüth, F. X., M. Solá, P. Acebo, A. Párraga, A. Guasch, R. Eritja, A. González, M. Espinosa, G. del Solar, and M. Coll. 1998. The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator. EMBO J. 17:7404-7415.[CrossRef][Medline]
11 - Knight, K. L., and R. T. Sauer. 1989. Identification of functionally important residues in the DNA binding region of the Mnt repressor. J. Biol. Chem. 264:13706-13710.[Abstract/Free Full Text]
12 - Kwak, J.-H., and B. Weisblum. 1994. Regulation of plasmid pE194 replication: control of cop-repF operon by Cop and of repF translation by countertranscript RNA. J. Bacteriol. 176:5044-5051.[Abstract/Free Full Text]
13 - Lacks, S. A., P. López, B. Greenberg, and M. Espinosa. 1986. Identification and analysis of genes for tetracycline resistance and replication functions in the broad-host-range plasmid pLS1. J. Mol. Biol. 192:753-765.[CrossRef][Medline]
14 - Lipps, G., M. Stegert, and G. Krauss. 2001. Thermostable and site-specific DNA binding of the gene product ORF56 from the Sulfolobus islandicus plasmid pRN1, a putative archaeal plasmid copy control protein. Nucleic Acids Res. 29:904-913.[Abstract/Free Full Text]
15 - McDowell, D. G., and N. H. Mann. 1991. Characterization and sequence analysis of a small plasmid from Bacillus thuringiensis var. kurstaki strain HD1-DIPEL. Plasmid 25:113-120.[CrossRef][Medline]
16 - Moncalián, G., G. Grandoso, M. Llosa, and F. de la Cruz. 1997. OriT-processing and regulatory roles of TrwA protein in plasmid R388 conjugation. J. Mol. Biol. 270:188-200.[CrossRef][Medline]
17 - Murayama, K., P. Orth, A. B. de la Hoz, J. C. Alonso, and W. Saenger. 2001. Crystal structure of
transcriptional repressor encoded by Streptococcus pyogenes plasmid pSM19035 at 1.5 Å resolution. J. Mol. Biol. 314:789-796.[CrossRef][Medline]
18 - Oberer, M., K. Zangger, S. Prytulla, and W. Keller. 2002. The anti-toxin ParD of plasmid RK2 consists of two structurally distinct moieties and belongs to the ribbon-helix-helix family of DNA binding proteins. Biochem. J. 361:41-47.[CrossRef][Medline]
19 - Pabo, C. O., and R. T. Sauer. 1992. Transcription factors: structural families and principles of DNA recognition. Annu. Rev. Biochem. 61:1053-1095.[CrossRef][Medline]
20 - Rafferty, J. B., W. S. Somers, I. Saint-Girons, and S. E. V. Phillips. 1989. Three dimensional crystal structures of Escherichia coli Met repressor with and without corepressor. Nature 341:705-710.[CrossRef][Medline]
21 - Raumann, B. E., M. A. Rould, C. O. Pabo, and R. T. Sauer. 1994. DNA recognition by beta-sheets in the Arc repressor-operator crystal structure. Nature 367:754-757.[CrossRef][Medline]
22 - Sabelnikov, A. G., B. Greenberg, and S. A. Lacks. 1995. An extended -10 promoter alone directs transcription of the DpnII operon of Streptococcus pneumoniae. J. Mol. Biol. 250:144-155.[CrossRef][Medline]
23 - Somers, W. S., and S. E. V. Phillips. 1992. Crystal structure of the met repressor-operator complex at 2.8 Å resolution reveals DNA recognition by ß-strands. Nature 359:387-393.[CrossRef][Medline]
Journal of Bacteriology, September 2002, p. 4943-4951, Vol. 184, No. 18
0021-9193/02/$04.00+0 DOI: 10.1128/JB.184.18.4943-4951.2002
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