Journal of Bacteriology, September 2005, p. 5861-5867, Vol. 187, No. 17
0021-9193/05/$08.00+0 doi:10.1128/JB.187.17.5861-5867.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Division of Integrated Life Science, Graduate School of Biostudies, Kyoto University, Oiwake-cho, Kitashirakawa, Sakyo-ku, Kyoto 606-8502, Japan
Received 28 April 2005/ Accepted 30 May 2005
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-glutamyltranspeptidase, has an important role in E. coli growth with glutathione as a sole sulfur source. |
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-glutamylcysteinylglycine; GSH) plays a leading role in the protection of cells and organisms by reducing oxygen species and peroxides and acts against xenobiotics and drugs by the formation and excretion of glutathione S conjugates (16). Because of its protective effect on organs, glutathione has been dispensed to patients with hepatic diseases in Japan. Glutathione and its derivatives are moved in and out of cells by transporters of several types. The glutathione importers Na+-dependent transporter (10) and H+ symporter (9) are known, and the only glutathione transporters with the ATP-binding cassette identified so far are glutathione S conjugate exporters (4). As for microbial glutathione transporter, Saccharomyces cerevisiae YCF1 of the vacuolar membrane is known as a glutathione S-conjugate transporter (14), which also transports reduced glutathione into vacuoles (20), and yeast HGT1 of the plasma membrane is known as a membrane-potential-dependent glutathione importer across the plasma membrane (3). However, there has been no report on the identification of bacterial glutathione transporter.
It has been shown that Escherichia coli cells grown in aerobic conditions contain a large amount of glutathione (7). E. coli synthesizes glutathione by the sequential actions of
-glutamylcysteine synthetase (the product of gshA) and glutathione synthetase (the product of gshB) as in other organisms (1). It excretes glutathione into the culture medium during the exponential phase and the concentration of glutathione in the culture medium reaches maximum in the early stationary phase (18, 26), but thereafter, it is hydrolyzed by
-glutamyltranspeptidase (GGT) in the periplasm to liberate glutamic acid and cysteinylglycine (22, 26). Cysteinylglycine is taken up into the cytoplasm and then cleaved into cysteine and glycine by aminopeptidases A, B, and N and dipeptidase D to be utilized as a source of cysteine and glycine (25). We have suggested that this is the salvage pathway of cysteine for E. coli (23). It was also shown by other researchers in a mammalian cell line (8) and in yeast (15) that GGT catalyzes the initial step of the cleavage of extracellular glutathione for use as a source of cysteine and nitrogen. However, even in the case of a GGT-deficient strain of E. coli, the concentration of glutathione in the culture medium decreased gradually after prolonged incubation. This finding prompted us to search for a glutathione transporter which had never been reported in bacteria.
The ybiK gene was reported as a member of the cysB regulon and it was suggested to encode a protein involved in glutathione transport or metabolism (19), but its mechanism is still unclear. GenBank suggests that four genes, yliA, -B, -C, and -D, located downstream of ybiK, are transcribed with ybiK (Fig. 1). EcoCys (11) suggests that YliA, -B, -C, and -D are uncharacterized members of the ATP-binding cassette superfamily transporters. It suggests that yliA and -B encode the ATP-binding component and periplasmic binding protein, respectively, and that yliC and -D encode the plasma membrane components. From the above information, we speculated that YliA, -B, -C, and -D might encode the glutathione transporter.
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FIG. 1. The structure of the ybiK-yliABCD operon. The order, size, and products of the genes and the location of the promoter suggested by GenBank and EcoCys were diagrammed. The region of DNA deleted in our yliAB mutation is shown by the bar above the genes. Gene names in parentheses are the new names proposed, after glutathione importer.
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yliAB mutation on the cell growth was measured. Ampicillin, tetracycline, and kanamycin were added at 100, 10, and 30 µg/ml, respectively, when appropriate. The bacteria were grown at 37°C with reciprocal shaking at 100 rpm. |
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TABLE 1. Bacterial strains, phage, plasmids, and oligonucleotides used in this study
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yliAB strain was constructed as follows. The DNA fragment of Kohara clone (12) #208 containing the yliA gene region was cloned onto pUC18 to obtain pSH1517. The FRT-Kanr-FRT fragment was amplified by PCR using oligonucleotides pKD13-1 and pKD13-4 as primers and pKD13 as a template with ExTaq DNA polymerase (Takara, Kyoto, Japan). The fragment was blunt ended with a blunting kit (Takara, Kyoto, Japan) and ligated with the 3.1-kb NruI and SacII (blunt-ended) fragment of pSH1517, which deleted most of the yliA gene and the N-terminal region of yliB (Fig. 1). The obtained plasmid was cleaved with EcoRI and HindIII, and the 1.8-kb fragment was used to transform strain TK251 by electroporation. Kanamycin-resistant transformant SI26 was obtained. The
yliAB::Kanr strain was transduced into the strains with appropriate backgrounds by the P1vir phage. The transductants were transformed with pCP20 at 30°C to eliminate the Kanr determinant. Then, pCP20 was cured by incubating the strains at 37°C. The deletion made on the genome was confirmed by colony PCR using oligonucleotides yliA-1 and yliA-2.
gshA::Kanr and
gshA were constructed similarly. The DNA fragment containing the gshA gene region was amplified by PCR using oligonucleotides 286 and +1746 as primers and genomic DNA of E. coli as a template. The fragment was cleaved with PvuI and PstI and ligated with pBR322 cleaved with the same restriction endonucleases to obtain pFK68. The blunt-ended FRT-Kanr-FRT fragment obtained above was ligated with the 5.4-kb BglII (blunt-ended) and BssHII (blunt-ended) fragment of pFK68. The obtained plasmid was cleaved with AseI and ScaI, and the 2.6-kb fragment was used to transform strain TK251 by electroporation. Kanamycin-resistant transformant SI95 was obtained.
gshA::Kanr was moved into the strain SI35, and Kanr determinant was eliminated as described above. The deletion made on the genome was confirmed by colony PCR using oligonucleotides gshA-1 and gshA-2.
The plasmids with the yliA, -B, or -C gene deleted from pSH1596 were constructed as follows. The NcoI site was inserted 3 bp after the stop codon of yliD of pSI152 to obtain pSH1569 with yliD-E NcoI and yliD-E NcoI-comp as mutagenic primers by the QuikChange method (Stratagene) except KOD plus DNA polymerase (Toyobo, Osaka, Japan) was used. The DNA fragment between the AatII and NcoI sites, located upstream of ybiK, was deleted from pSH1569, and pSH1584 was made. The DNA fragment containing the coding region of the lacZ gene was amplified by PCR using oligonucleotides LacZ-fusion-up and LacZ-fusion-down and pMC1871 as a template. The fragment was cleaved with NcoI and HindIII and ligated with pSH1584 cleaved with the same restriction endonucleases to obtain pSH1596. Then, yliA gene was looped out from pSH1596 using oligonucleotides delyliA and delyliA-comp as mutagenic primers by the QuikChange method. The correctness of the DNA sequence of the mutated plasmid (pSH1597) was confirmed. DH5
was transformed with pSH1597, and the colonies of the transformant formed on the LB plate supplemented with 5-bromo-4-chloro-3-indolyl-ß-D-galactopyranoside (X-Gal) were blue, as well as the DH5
transformed with pSH1596. This indicates that the
yliA deletion does not interfere with the transcription of the downstream genes of the operon, as intended. The yliB and -C genes were deleted from pSH1596 similarly. This
yliA deletion extends from the fifth base from the stop codon of ybiK to the base just before the stop codon of yliA. The
yliB deletion extends from the base just after the initiation codon of yliB to the initiation codon of yliC. The
yliC deletion extends from the initiation codon of yliC to the base just before the initiation codon of yliD.
Measurement of glutathione. Reduced glutathione was measured using standard compounds (Sigma-Aldrich) with a high-pressure liquid chromatography (HPLC) instrument (model LC-9A; Shimadzu, Kyoto, Japan) equipped with a Shim-pack Amino-Na column and a fluorescence detector (model RF-535; Shimadzu), with o-phthalaldehyde as the detection reagent (24). Reduced and oxidized glutathione could be measured separately by this method. Total glutathione was measured with glutathione reductase (Sigma-Aldrich) by the method of Fahey et al. (6).
Transport assay. Transport assay was performed as described previously (13) using [35S]glutathione (final concentration, 2 nM; 35.4 Tbq/mmol; PerkinElmer) except M9 glucose medium was used instead of M63 medium. When the effects of verapamil (Nacalai Tesque, Kyoto Japan) and carbonylcyanide-m-chlorophenylhydrazone (CCCP) (Nacalai Tesque, Kyoto Japan) were determined, cells were preincubated in the presence of these chemicals for 30 min at 37°C prior to the addition of labeled glutathione.
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ggt and
yliAB on the concentration of extracellular glutathione.
Since the wild-type E. coli accumulates only several µM glutathione at a maximum in the medium and it is difficult to measure such a low concentration of glutathione, the strains were transformed with a plasmid, pSH1391, which contains the gshA and gshB genes on pBR322, to overproduce glutathione-synthesizing enzymes. There was little difference in the growth among the strains used. The effects of
ggt and
yliAB on the concentration of extracellular glutathione were compared (Fig. 2). The concentration decreased after reaching the maximum during the early stationary phase when either ggt or yliAB was normal. That
ggt yliA+ yliB+ strain accumulates much more glutathione in the medium than the ggt+
yliAB strain indicates that GGT is more effective in reducing the concentration of extracellular glutathione than the YliABCD transporter. On the other hand, the extracellular glutathione of the
ggt
yliAB strain gradually increased even during the stationary phase. When the
ggt
yliAB strain was complemented with pACYC177 containing the ybiK+-yliA+ yliB+ yliC+ yliD+ operon, the extracellular GSH was dramatically decreased.
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FIG. 2. Glutathione concentration of the culture media. Strains SI37 ( ggt yliAB) (filled square), SI49 ( ggt) (open square), SH1555 (pACYC177::ybiK+-yliA+ yliB+ yliC+ yliD+/ ggt yliAB) (filled triangle), SI103 ( yliAB) (filled circle), and SI104 (ggt+ yliA+ yliB+) (open circle) were grown in 100 ml minimal medium. At the times indicated, 2 ml of culture was subtracted. An optical density at 610 nm was measured using 1 ml of the 2-ml culture. Another 1 ml was centrifuged, and the concentration of glutathione of the culture fluid was measured with glutathione reductase.
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yliAB strain transported practically no glutathione, while its yliA+ yliB+ derivative obviously transported glutathione. Moreover,
yliAB strain transformed with pACYC177 containing ybiK+-yliA+ yliB+ yliC+ yliD+ complemented the GSH transport phenotype. However, the same strain transformed with pACYC177 containing ybiK+-yliA+ yliB+ yliC+ did not complement the phenotype (Fig. 3A).
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FIG. 3. Glutathione uptake in a transporter assay. (A) Strains SI35 ( ggt yliAB) (filled triangles), SH703 ( ggt) (open circles), SH1552 (pACYC177::ybiK+-yliA+ yliB+ yliC+ yliD+/ ggt yliAB) (filled circles), and SH1554 (pACYC177::ybiK+-yliA+ yliB+ yliC+/ ggt yliAB) (open triangles). (B) Strains SH1617 (pACYC177::ybiK+-yliA+ yliB+ yliC+ yliD+-lacZ+/ ggt yliAB) (filled circles), SH1618 (pACYC177::ybiK+-yliB+ yliC+ yliD+-lacZ+/ ggt yliAB) (open circles), SH1619 (pACYC177::ybiK+-yliA+ yliC+ yliD+-lacZ+/ ggt yliAB) (filled triangles), and SH1620 (pACYC177::ybiK+-yliA+ yliB+ yliD+-lacZ+/ ggt yliAB) (open triangles).
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yliAB strain was transformed with these plasmids, and a transport assay was performed. Transport of glutathione was not observed when the operon deleted either yliA, -B, or -C (Fig. 3B).
Effect of
yliAB mutation on the intracellular concentration of glutathione.
Glutathione-synthesis-deficient (
gshA) derivatives of the above strains were grown overnight in the minimal medium supplemented with or without 1 mM reduced glutathione. The cells were then opened by ultrasonication, and the amount of glutathione accumulated inside the cells was measured by HPLC (Fig. 4). All the glutathione found was in reduced form, and no oxidized form was observed. The amount of total glutathione measured with glutathione reductase agreed well with that of reduced glutathione found by HPLC (data not shown). When these four strains were grown in the minimal medium without glutathione, no detectable glutathione was found inside these strains. Although
yliAB mutation decreased the accumulation of glutathione inside the cells, nonnegligible accumulation of glutathione was observed even in the strain with
yliAB
ggt
gshA (strain SI100). The
yliAB mutation was complemented with pACYC177 containing ybiK+-yliA+ yliB+ yliC+ yliD+ (strain SI154), but not with pACYC177 containing ybiK+-yliA+ yliB+ yliC+ (strain SI153).
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FIG.4. Accumulation of glutathione in the cells grown in minimal medium supplemented with 1 mM glutathione. Strains SI100 (pACYC177/ gshA ggt yliAB), SI109 (pACYC177/ gshA ggt), SI153 (pACYC177::ybiK+-yliA+ yliB+ yliC+/ gshA ggt yliAB), and SI154 (pACYC177::ybiK+-yliA+ yliB+ yliC+ yliD+/ gshA ggt yliAB) were grown in minimal medium supplemented with 1 mM reduced glutathione for 12 h. The amount of glutathione found in the cells was expressed as relative to that for strain SI154. Seventy-four nanomoles of glutathione per mg of cells was found in strain SI154.
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FIG. 5. Effect of verapamil on glutathione uptake. Glutathione uptake of strain SH1552 was measured in the absence of verapamil (filled circles) and in the presence of 1 mM (open circles) and 10 mM verapamil (open triangles).
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yliAB mutation on cell growth.
The ability of the YliABCD transporter to utilize glutathione as a sole sulfur source was also investigated. The cysA gene encodes sulfate permease, and a cysA mutant cannot grow with SO42 in the medium and it is a cysteine auxotroph. The cysA
ggt (sulfate transport and GGT-deficient) strain grew weakly on minimal medium with 0.3 mM glutathione as a sole sulfur source (Fig. 6b, row 4), while almost no growth was observed for its
yliAB derivative on the same plate (Fig. 6b, row 3). The doubling times of the cysA, cysA
yliAB, cysA
ggt, and cysA
yliAB
ggt strains in minimal medium supplemented with 0.3 mM glutathione at 37°C were 1.7, 2.1, 3.2, and 12 h, respectively.
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FIG. 6. Growth of E. coli strains on a minimal medium plate supplemented with glutathione as the sole sulfur source. Strains were grown overnight in 5 ml LB medium, washed twice, and suspended with 5 ml of 1x M9 buffer. One µl of cell suspension was plotted on plates and grown overnight at 37°C. Strains 1 (SH1535; cysA yliAB::Kanr), 2 (SH1527; cysA), 3 (SH1525; cysA ggt yliAB::Kanr), and 4 (SH1504; cysA ggt) were grown on minimal medium supplemented with 0.05 mM thiamine without any sulfur source (column a) or with 0.3 mM glutathione (column b) or 0.3 mM cysteine (column c) as a sole sulfur source.
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-glutamyl linkage by GGT (22, 26). However, the concentration of extracellular glutathione decreased gradually after prolonged incubation even when the ggt gene was deleted (Fig. 2, SI49) and the existence of a glutathione importer was suspected. As described in the introduction, we predicted that YliABCD is a glutathione importer. When both
ggt and
yliAB were deleted, the concentration of the extracellular glutathione did not decrease up to 55 h (Fig. 2, SI37). These results indicate that GGT and the YliABCD transporter are the two determinants that decrease the extracellular glutathione. Since yliA and -B are located upstream of yliC and -D and the promoter of the operon before ybiK (Fig. 1), the complementation test was performed using the plasmid containing whole operon.
A transport assay was performed using [35S]glutathione and GGT-deficient derivatives (Fig. 3). This is because GGT cleaves glutathione in the periplasm and cysteinylglycine uptake into the cytoplasm occurs. In fact, a ggt+
yliAB strain took up a nonnegligible amount of 35S in a transport assay (data not shown). To avoid an overestimation of glutathione uptake by the transporter, GGT-deficient strains were used in this experiment. It was shown that uptake of 35S into the cells depends on the YliABCD transporter in GGT-deficient strains (Fig. 3A). The plasmid with yliA+ yliB+ yliC+ yliD+ could complement the
yliAB mutation, but the plasmid with yliA+ yliB+ yliC+ could not (Fig. 3A). This result strongly suggests that this
yliAB mutation has a polar effect on the downstream genes. Therefore, as shown in Fig. 3B, only one of the yliA, yliB, and yliC genes was carefully deleted with the intent of not causing a polar effect on the downstream genes. None of the deletions caused a polar effect, confirmed by the expression of the lacZ gene inserted just after the yliD gene. Our findings indicate that YliA, -B, -C, and -D are the components of the transporter because the transport activity was abolished if any one of them was deleted (Fig. 3A and B). The ybiK gene exists in front of yliABCD, and the possibility that they constitute an operon has been suggested (Fig. 1). Since the function of YbiK is not clear and its involvement in glutathione transport or metabolism has been suggested (19), there is a possibility that YbiK processes glutathione and then only a part of its molecule containing 35S is taken up into the cell. To deny this possibility and to show that the whole glutathione molecule is taken up by the YliABCD transporter, the concentration of glutathione accumulated inside glutathione-synthesis-deficient mutants grown in medium supplemented with glutathione was measured (Fig. 4). These results clearly show that the whole glutathione molecule was transported into the cell by the YliABCD transporter. Parry and Clark suggested the involvement of YbiK in glutathione transport or metabolism (19). Since they used strains with the ybiK::Kanr mutation, which has polar effect on yliA, -B, -C, and -D, their suggestion of the involvement of YbiK in glutathione transport might have been derived from this polar effect. A study on the role of YbiK is under way, and the results will be reported elsewhere.
Transport of glutathione was inhibited by verapamil, but not by CCCP. This indicates that this transport system depends on ATPase activity and not on membrane potential (Fig. 5).
To determine whether the transport of glutathione by the YliABCD transporter has physiological meaning, the effect of its absence on the growth of E. coli by using glutathione as a sole sulfur source was observed. The cysA mutant grew on a minimal medium plate supplemented with glutathione as a sole sulfur source (Fig. 6b, row 2). The growth of the cysA
yliAB strain (Fig. 6b, row 1) was obviously weaker than that of the cysA strain. The growth of the cysA
ggt strain was severely retarded (Fig. 6b, row 4), and almost no growth was observed for the cysA
ggt
yliAB strain on the same plate (Fig. 6b, row 3). The growth of cells in column c (minimum medium supplemented with cysteine as a sulfur source (Fig. 6c) was less than that of the cysA mutant on minimum medium supplemented with glutathione (Fig. 6b, row 2). We should mention that the addition of this much cysteine inhibits cell growth. The doubling time of these strains in the liquid minimal medium was compared, and the results indicated that both GGT and the YliABCD transporter are important in the growth of E. coli with glutathione as a sole sulfur source.
Although no detectable glutathione uptake was observed in the
ggt
yliAB strain by transport assay, there was some accumulation of glutathione inside the
ggt
yliAB
gshA strain grown in minimal medium supplemented with glutathione (Fig. 4, strain SI100). In fact, the cysA
ggt
yliAB strain could grow in minimal medium supplemented with glutathione as a sole sulfur source (Fig. 6b, row 3); however, its doubling time was extremely long. It is possibile that a nonspecific glutathione uptake system besides YliABCD and GGT exists in E. coli.
Boos and Lucht (2) reviewed the periplasmic binding-protein-dependent ABC transporters of E. coli, and they proposed a consensus sequence of the ATP-binding cassette subunits. The amino acid sequence of YliA conserved many of the consensus residues. YliA has repeats of Walker motif A-linker peptides-Walker motif B (Walker motif A, residues 55 through 63 and 363 through 371; linker peptides, residues 175 through 183 and 470 through 478; Walker motif B, residues 195 through 201 and 490 through 496). According to the MOTIF program (GenomeNet, Japan), YliB has a bacterial extracellular solute-binding protein family 5 signature (residues 76 through 98) and YliC and -D have binding-protein-dependent transport system inner membrane component signatures (residues 197 through 225 and 188 through 216, respectively). Also, the SignalP program (Technical University of Denmark) predicts that the first 26 amino acids of YliB constitute a signal peptide. The SOSUI program (Department of Biotechnology, Tokyo University of Agriculture and Technology) predicted that YliC and -D have six and seven transmembrane helices, respectively. All of these indicate that YliABCD composes an ATP-binding cassette superfamily transporter, YliA and -B being an ATP-binding component and a periplasmic binding protein, respectively, and YliC and -D being plasma membrane components. We propose the name gsi for these genes, after glutathione importer. yliA, -B, -C, and -D would be renamed gsiA, -B, -C, and -D, respectively.
This is the first report not only of bacterial glutathione transporter but also of a glutathione importer with an ATP-binding cassette among all organisms. The homology search suggests that Escherichia coli O157:H7, Shigella flexneri, Salmonella enterica serovar Typhi, and Salmonella enterica serovar Typhimurium have homologues. Our finding of a new glutathione importer with an ATP-binding cassette indicates that there is more diversity in the mechanism of glutathione transport across cell membranes than previously considered.
Present address: Research Institute of Natural Resources, Ishikawa Prefectural University, Nonoichi-cho, Ishikawa-gun, Ishikawa 921-8836, Japan. ![]()
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